rs254694501 SNP Detail

Summary

• ID
  rs254694501
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43479013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGAGAA AAGTGTAGAA
  ATGAAAACCT CTGCTTCCTC TTTCTTTTTC TGTTTGTTTT TGTTTTTTTG AGACATGGTT
  TCTCTGTATA GCCCTGGCTG TCCTGGAACT CACTTTGTAG ACCAGGCAGG CCTAGAACTC
  AGAAATCCAC CTGCCTCTGC CTTCCGAGTG CTGGGATTGC TGGGATTAAA GGCGTGCGCC
  M
  CCATGCCCGG CTTGCTTTCT CTTTCTTATG TCCTTCAAAC ACCAAAAAGG TTGGTGGCGC
  TGGAGCTCAG GCTGAAGGCG ATTTCTTCCC CCCTCCCCCC TCCGTTCTGC TATGGGATGC
  TGGAGCTAAG AAGGAGTTGG ACTTTTTTCC AGAGTGGGGT GGATCACAGA TGGGCTACAG
  AAAAGTTGGA GGATTGGTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361321460	MGP_WTSI_4_43491885	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254694501					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361321460	MGP_WTSI_4_43491885	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43479013 () rs orientation: forward

Symbol	Name	Function Class
Gm70652	predicted gene, 70652	197 bp upstream
Rr398231	regulatory region 398231	464 bp downstream
Rr590993	regulatory region 590993	1913 bp distal
Rr590995	regulatory region 590995	1927 bp distal
Rr590996	regulatory region 590996	236 bp distal
Rr590997	regulatory region 590997	623 bp distal
Rr590998	regulatory region 590998	107 bp distal
Rr590999	regulatory region 590999	within coordinates
Rr591000	regulatory region 591000	43 bp proximal
Rr591001	regulatory region 591001	654 bp proximal
Rr591002	regulatory region 591002	1190 bp proximal
Rr591003	regulatory region 591003	1909 bp proximal
Tssr41421	transcription start site region 41421	202 bp upstream