rs254680910 SNP Detail

Summary

• ID
  rs254680910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132244313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTGGGGG GAGGGTGGGG
  TGGGGTGGGG GGATATATGA GACCTTGACT GACTGCTTGT CCTGTGCACA AGCTGGAGTG
  CTTAGATTAT ACCCCTGTGC TATCATTCTG GGCTCTTCAA CTTTTAATCC TTTACAAAAA
  ATCAGTAGTT TATTTCTTTT CCGTTTATGT GCCTGTGTGT GACCCGATGA GCACAAGGTG
  Y
  CCTCAGAGGC CTCTGCTACA CGAGACCTTG TCTTTTTTTT TTTTTAAAGA TTTGTTTATT
  GGGGGCTGGA GAGATGGCTC AGCGGTTAAG AGCACTGACT GCTCTTCCAA AGGTCCTGAG
  TTCAAATCCC AGCAACCACA TGGTGGCTCA CAACCATCCG TAATGAGATC TGATGCCCTC
  TTCTGGAGTG TCTGAGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321333980	CHEV_4_132072917	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254680910					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132244313 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	923 bp downstream
Rr377207	regulatory region 377207	687 bp downstream
Rr600996	regulatory region 600996	1712 bp distal
Rr600998	regulatory region 600998	974 bp distal
Rr600999	regulatory region 600999	772 bp proximal
Tssr39372	transcription start site region 39372	1174 bp downstream
Tssr43681	transcription start site region 43681	1568 bp upstream