rs254676422 SNP Detail

Summary

• ID
  rs254676422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133453939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATAGGTG GAACAACATT
  ATGAACTAAC CAGTACCCCG GAGCTCTTGA CTCTAGCTGC ATATGTATCA AAAGATGGCC
  TAGTCGGCCA TCATTGGAAA GAGAGGCCCA TTGGACACAC AAACTTTATA TGCCCCAGTA
  CAGGGGAACG CCAGGGCCAA AAAGGGGGAG TGGGTGGGTA GGGGAGTGGG GGTGGGTGGG
  Y
  ATGGGGGACT TTTGGTATAG CATTAGAAAT GTAAATGAGC TAAATACCTA ATAAAAAATG
  GAAAAAAAAT CCAAAAACCT CATTTATTTA CAATGACAAT GAACATAGGA AACTTGTAAA
  AAAACAAACA AACAAATTTT AAGTTATTGT TTCAAAGTTT TAAAAGATAT TTTTTAAAAA
  TTTAAGAGAT TTTATGAACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
ss359796414	MGP_WTSI_3_133411142	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
rs254676422					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359796414	MGP_WTSI_3_133411142	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133453939 () rs orientation: forward

Symbol	Name	Function Class
Gm64379	predicted gene, 64379	within coordinates
Rr398038	regulatory region 398038	978 bp upstream
Rr585594	regulatory region 585594	326 bp proximal
Rr585595	regulatory region 585595	1350 bp proximal
Tssr35771	transcription start site region 35771	1352 bp downstream