rs254648503 SNP Detail

Summary

• ID
  rs254648503
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100730868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGACACA ATCACAGGGA
  AGCCCATGGC TGAGGGGAGA GTGAGGATGA CTGGGCAGGG TGGGGGGCAT TAGCAGAGTC
  ACAGAGAACA GTGGGTGTCC CTCAAGGGCT GGAGAGGGAG CAAAGCTTCT GTCTGTCTAT
  CTGTCTGTCT GTCTGTCTGT CTTTCTCTCT GTATACACAC ACACCACAAT GCCCTTTGCC
  R
  TTTTTAAAAA TATGTTCACT GTTTCTGTTT CACAGCCAGA ACTGGAGTGA TGTCAGTTTG
  CTTCTCCAGA GATGGCAGAA TGTTCTTCAG CTTGCATCCC TGCTGTGGCA ACGCCCACTG
  TGCAGCCTGT GGCTTCTTTA GCTCCTTACC TTCCTTACGG GGCAGTGTGC ACCTGCCCCC
  AATGACATCT CCCCCAGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320849656	CHEV_3_100627475	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254648503					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100730868 () rs orientation: forward

Symbol	Name	Function Class
Gm32720	predicted gene, 32720	within coordinates
Rr581912	regulatory region 581912	1886 bp distal
Rr581914	regulatory region 581914	1875 bp distal
Rr581915	regulatory region 581915	1820 bp proximal
Tssr30883	transcription start site region 30883	1900 bp upstream
Vtcn1	V-set domain containing T cell activation inhibitor 1	1907 bp upstream