rs254639859 SNP Detail

Summary

• ID
  rs254639859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135796309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGCATAC ACACACATAC
  ACTATATACA CACATGTATG CACGCATGCA CAGGCACACA CACATAGGCA CACACACATA
  TACCCCACAC ATGCATACAC CACACACACA CATGCATGCA TGCATGCATA TGCACACAAT
  GCATATACAT GCACACACAA ACATGTAAAC ACATATAAAC TATATACATG TGCATATATG
  Y
  ATGCATATGC ACACACATGC ACACACACAC AAGATACTAA TGTGTCCTAG TGCCAGGCAT
  TGTACCTAGG GTCCTCCTCG CCTTGTCTAC CCTGCACACC CAGGCCCTTG TCTACCCTGC
  ACACCCAGGC TCTTGTCCAG CCTGCACACC CAGGCCCTTG TCTACCCTGC ACACCCAGGC
  CCCTGTCCAG CCTGCACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363382105	MGP_WTSI_4_135624913	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	C	T	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C	T	T	C	C	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254639859					SNP	C	C	C	T	T	C	T	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C	T	T	C	C	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363382105	MGP_WTSI_4_135624913	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135796309 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	992 bp proximal
Rr602257	regulatory region 602257	830 bp proximal
Rr602258	regulatory region 602258	1114 bp proximal
Rr602259	regulatory region 602259	1755 bp proximal