rs254633833 SNP Detail

Summary

• ID
  rs254633833
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116695790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTTAATG TATATCATAA
  ATTAAACATT AAATATATTA AACATTATAG ATTAAAGACA TATATTAAAC ATAATATATA
  CATGTATATG TATATACACA TTTATATACA TGAATATATA CATATATACT TATATATACC
  TATATATTAT ACACATATAG TCCATATTAA ACATATATAT TAAACATTAA ATATTTTTAT
  W
  TGTAAATTTA CACATAAGTA TATATATGTA TATATATACA TATGCATCCC TAGAGCTGGG
  ATTAAAGGCA CGTGCCACCA CTGCCTGGCT ATTTAATGTA TTTTAATTGA TGTAATTACA
  CAATTATTAC TTTTACTGGG CACTAAGTTT GAGCATTTCT CTTTCTACAC AGTGGCAGCA
  ATGTTCCTAG GAATGGATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss359364727	MGP_WTSI_3_116605059	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs254633833					SNP	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359364727	MGP_WTSI_3_116605059	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116695790 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frrs1	ferric-chelate reductase 1			Intron
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			1948 bp proximal
Rr583801	regulatory region 583801			1979 bp proximal
Tssr31391	transcription start site region 31391			1436 bp upstream
Tssr31392	transcription start site region 31392			1522 bp upstream
Tssr31393	transcription start site region 31393			1556 bp upstream
Tssr31394	transcription start site region 31394			1578 bp upstream