rs254623504 SNP Detail

Summary

• ID
  rs254623504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129185276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGAAAAG CTATTCAGCA
  AGATTCGCAA CATTAGTGTT TGGAGTCCAT ACGCATAGAT TGTATGTGTG CACACACATA
  TGATTCTGTA CACATACAGA CTGATTCTGA ACTCTCTCTG CTGGTGAGAA TGACCCGGAA
  CCTCTGATTC TCCTGCCTCT ACCTCCTGAG TGTTGAGGTT ACAGGAATAG GCGCGTACTA
  Y
  CTACCACAGC AGGTTTTATG TGGTGCTAGG GATCAAGGCC AAGACCTCCG ACATGTTCCA
  TGAGCACTCT ACCCACTGAG CTGCGGCCTC AGCTATTACC TGTGTGTGTT TGTGTGTTTG
  CACAATGTGT GCGCGTGTGT AGAGGCCAGA GGTCAATTTT GTATGTCCTC AACGGTTTTT
  CATAGGATCC CTCGCTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321311650	CHEV_4_128968727	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254623504					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129185276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14888	CpG island 14888	1920 bp proximal
Sync	syncoilin	Intron