rs254616425 SNP Detail

Summary

• ID
  rs254616425
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132571626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTATGCAG TGGATGGTCC
  TTTTTTCACT TTTGCAGAAA GATGGGATGA TGACTTCACA GTTTTTAAAA GAAACAAATG
  GTTGGAGGGT GTGGCAGCAC ATATCTGAAA TTCCATCTGC CTTTGCTTCC TGAGATACAG
  GGTTAAAGGT AGTCAACACT ATGCCCTGCT AGACAGTAAA ATTAATAATA ATAATAATAA
  W
  AAATTCTCCA GGTTTCAGTA AGCAACAGCA ATAGAACATG TCATGGTTTG AATATGCTTG
  GTCCAGGGAG TGGCACTATT TGGAGGTTTG GACTTGTTGA AATAAGTGTA TCATTGTAGG
  CTTGGGCTTT AAGTCCTGTA TCCTGGCTAC CTGGAAGTCA GTCTTCCACT AACAGCCTTC
  AGGTGAAAAT GTAGAACTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336788	CHEV_4_132400230	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254616425					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132571626 () rs orientation: forward

Symbol	Name	Function Class
Ppp1r8	protein phosphatase 1, regulatory subunit 8	1146 bp upstream
Rr367719	regulatory region 367719	1043 bp downstream
Rr367720	regulatory region 367720	856 bp downstream
Rr601096	regulatory region 601096	1203 bp distal
Rr601097	regulatory region 601097	1191 bp distal
Rr601098	regulatory region 601098	656 bp distal
Rr601099	regulatory region 601099	854 bp distal
Tssr43718	transcription start site region 43718	1370 bp upstream
Tssr43719	transcription start site region 43719	1131 bp upstream