rs254606608 SNP Detail

Summary

• ID
  rs254606608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:4047788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGCTGCT CAAGCGGAGG
  GTTACTTAGT GAGAGGCTTG GGGCCCACCC ACCGCCTCCT TGGTCCTTTC CTATCTATGA
  TCCCTGAAAT TAATTACCCT TGTGCTTGTG GAGGGTTTAA ACAGGCAGCC AGTGGAACCC
  AGGAGTTAAT GAGGTTCTGG GGGGGGGGGC TGTTAGCCTT CCTTCCAGTG CTGACTTGGG
  Y
  TACTCCTGAG ATTGGGGGGG GGGGGGGACG AGAGACTCAA GGCTTATGAC AAAAAGTTTC
  AAAGAGCTTT GGATACCCAT CACATCTAGT GGCCTGCTAC CTTGCAACCA TCATTACAAT
  CATGGAGGTT TGGTCCATGT TCATTTAGGA GCAAGTTTCT CCCCAGCAGC TGGCTTCCCT
  GAGTATGACA TCCAATCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382253170	MGP_WTSI_11_3997791	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254606608					SNP	T	T	T	T	C	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382253170	MGP_WTSI_11_3997791	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4047788 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2504	CpG island 2504			737 bp distal
Gm72847	predicted gene, 72847			733 bp downstream
Rr369115	regulatory region 369115			309 bp downstream
Rr441726	regulatory region 441726			1853 bp distal
Rr441727	regulatory region 441727			25 bp distal
Rr441728	regulatory region 441728			191 bp proximal
Rr441729	regulatory region 441729			528 bp proximal
Sec14l2	SEC14-like lipid binding 2			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr100092	transcription start site region 100092			883 bp downstream