rs254572100 SNP Detail

Summary

• ID
  rs254572100
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:81910517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCTGGGA ATTGAACTCA
  GGACCTCTGG AAGAGCAGTA AGTGCTCTTA ACCACTGCAC CATCTCTCCA GCTGCCAGGT
  GTTAGTTATC GTCATTAAAA TTATATTATC ATTCAGCTAA TAAGCTGGCT CTCTAGGTAA
  AGGTGCATGC TGCCAAGCCT GACGGCCTGA GTTCTCCTCC TGGGACCCCT GTAGTGGAGG
  K
  AAAGGGCCAA CTTCTCAAGC TGCCCTCTGC CCTCCCACAC CCGCGCTGTG GATGTGCACC
  CTCCCCCCAG ATAAATAAGT GCTTTTGTTT TTCCAGACAG GGTTTCTCTG TGTAGCTCCG
  GGTGTCCTGG AACTTGCTCT GTAGAACAGG CTGGCCCTGA AATCAGACCT GCCTCTGCCT
  CCACCCAAGT GCTGGGATTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325033179	CHEV_15_81856746	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254572100					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81910517 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr506381	regulatory region 506381			1326 bp proximal
Tssr132336	transcription start site region 132336			1709 bp upstream
Tssr132337	transcription start site region 132337			1738 bp upstream
Tssr132338	transcription start site region 132338			1773 bp upstream
Tssr132339	transcription start site region 132339			1795 bp upstream
Tssr135523	transcription start site region 135523			1533 bp downstream
Xrcc6	X-ray repair cross complementing 6			Intron
				Noncoding-Transcript-Variant