rs254572009 SNP Detail

Summary

• ID
  rs254572009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43480124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGGAAC TCTGTAGACC
  AGGCTGGCCT CGAACTCAGA AATCTGTCTG CTTCTACCTC CCGAGTGCTG GGATTAAAGG
  CGTGTGCCAC CACGCCCTGC TCAAAAGGAG CTTTCTTATT TTTCTTTTTT TTTTTTTTTT
  TTTTTTTTTT CTTGTTAAAG AGCAAGGGTC TGGAGAGTTG GCTCAGTATT AAGAGCACTC
  R
  CTCTTGCAGA AGACTCTGCT TGGATCCCAG CACCCACAGA GTGGCTCACA ACCAACTATA
  ACTCCTGTTC CAGGAGAAGC AACTCCCTCT TCTGGCCTTT ATGGGACTGC ACATGCATAC
  ATGCAGGCAG GACACCCATA AACATAAAAA TAAAGGTTAA ATTGTTTAAT AACTTTAGGG
  GCCTGTAAAG ATGGCTCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361321477	MGP_WTSI_4_43492996	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254572009					SNP	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361321477	MGP_WTSI_4_43492996	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43480124 () rs orientation: forward

Symbol	Name	Function Class
Gm70652	predicted gene, 70652	1308 bp upstream
Rr398231	regulatory region 398231	1575 bp downstream
Rr590996	regulatory region 590996	1347 bp distal
Rr590997	regulatory region 590997	1734 bp distal
Rr590998	regulatory region 590998	1218 bp distal
Rr590999	regulatory region 590999	282 bp distal
Rr591000	regulatory region 591000	1047 bp distal
Rr591001	regulatory region 591001	436 bp distal
Rr591002	regulatory region 591002	79 bp proximal
Rr591003	regulatory region 591003	798 bp proximal
Sit1	suppression inducing transmembrane adaptor 1	1959 bp downstream
Tssr41421	transcription start site region 41421	1313 bp upstream