rs254571602 SNP Detail

Summary

• ID
  rs254571602
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117149925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACA ATTTGTCTAG ACTGCTCCTT
  R
  CCCACCTGAA CTGCCCTGTT CCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss641191307	FVB_NJ_6_117122982	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	A	G	G	G	G	G	A	G	A	G	G	G	G	A	G	A	G	A	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254571602					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	A	G	G	G	G	G	A	G	A	G	G	G	G	A	G	A	G	A	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss641191307	FVB_NJ_6_117122982	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117149925 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	296 bp distal
Rr637289	regulatory region 637289	902 bp proximal
Rr637290	regulatory region 637290	1087 bp proximal
Rr637291	regulatory region 637291	1138 bp proximal
Tssr58392	transcription start site region 58392	1477 bp downstream
Tssr58393	transcription start site region 58393	1458 bp downstream
Tssr58394	transcription start site region 58394	1418 bp downstream
Tssr58395	transcription start site region 58395	528 bp upstream
Tssr58396	transcription start site region 58396	544 bp upstream
Tssr58397	transcription start site region 58397	582 bp upstream
Tssr58398	transcription start site region 58398	608 bp upstream
Tssr58399	transcription start site region 58399	630 bp upstream
Tssr58400	transcription start site region 58400	658 bp upstream
Tssr58401	transcription start site region 58401	694 bp upstream
Tssr58402	transcription start site region 58402	725 bp upstream
Tssr58403	transcription start site region 58403	743 bp upstream
Tssr58404	transcription start site region 58404	762 bp upstream
Tssr58405	transcription start site region 58405	804 bp upstream
Tssr58406	transcription start site region 58406	834 bp upstream
Tssr58407	transcription start site region 58407	865 bp upstream
Tssr58408	transcription start site region 58408	932 bp upstream
Tssr58409	transcription start site region 58409	954 bp upstream
Tssr58410	transcription start site region 58410	976 bp upstream
Tssr58411	transcription start site region 58411	992 bp upstream
Tssr58412	transcription start site region 58412	1019 bp upstream
Tssr58413	transcription start site region 58413	1032 bp upstream
Tssr58414	transcription start site region 58414	1065 bp upstream
Tssr58415	transcription start site region 58415	1080 bp upstream
Tssr58416	transcription start site region 58416	1095 bp upstream
Tssr58417	transcription start site region 58417	1149 bp upstream
Tssr58418	transcription start site region 58418	1182 bp upstream
Tssr58419	transcription start site region 58419	1201 bp upstream
Tssr58420	transcription start site region 58420	1228 bp upstream
Tssr58421	transcription start site region 58421	1247 bp upstream
Tssr58422	transcription start site region 58422	1273 bp upstream
Tssr58423	transcription start site region 58423	1281 bp upstream
Tssr58424	transcription start site region 58424	1343 bp upstream
Tssr58425	transcription start site region 58425	1388 bp upstream
Tssr58426	transcription start site region 58426	1410 bp upstream
Tssr58427	transcription start site region 58427	1437 bp upstream
Tssr58428	transcription start site region 58428	1452 bp upstream
Tssr58429	transcription start site region 58429	1517 bp upstream
Tssr58430	transcription start site region 58430	1562 bp upstream
Tssr58431	transcription start site region 58431	1658 bp upstream
Tssr58432	transcription start site region 58432	1731 bp upstream
Tssr58433	transcription start site region 58433	1767 bp upstream
Tssr62617	transcription start site region 62617	592 bp downstream
Tssr62618	transcription start site region 62618	614 bp downstream
Tssr62619	transcription start site region 62619	650 bp downstream
Tssr62620	transcription start site region 62620	693 bp downstream
Tssr62621	transcription start site region 62621	759 bp downstream
Tssr62622	transcription start site region 62622	1311 bp downstream
Tssr62623	transcription start site region 62623	1329 bp downstream
Tssr62624	transcription start site region 62624	1444 bp downstream
Tssr62625	transcription start site region 62625	1595 bp downstream
Tssr62626	transcription start site region 62626	1691 bp downstream
Tssr62627	transcription start site region 62627	1722 bp downstream
Tssr62628	transcription start site region 62628	1857 bp downstream