rs254554852 SNP Detail

Summary

• ID
  rs254554852
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104961296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCTTTAAA GAACTTGTAA CACGTACATA
  TAAGAACTCA AGTATTTGAG TGCACAAGTA ACATATTACG CGGAATACAT TATTCCTAAT
  TTTCACAATA TTCAGCAAGA GACTATTAGG Gacacacaca cacacacaca cacacacaca
  M
  AAAGCCCTCT GCTCATggtt ctcaacctgt gggtcacgac cccctagaca accattataa
  aaatatctac attacaatct agaacagcaa aattacagtt atgaagtagc agcgtaatta
  tgtttgaggg agtcactata acatgaggaa                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320861381	CHEV_3_104856898	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254554852					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104961296 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	737 bp distal
Cttnbp2nl	CTTNBP2 N-terminal like	834 bp upstream
Rr367520	regulatory region 367520	830 bp downstream
Rr582659	regulatory region 582659	1040 bp distal
Rr582660	regulatory region 582660	344 bp distal
Rr582661	regulatory region 582661	560 bp proximal
Tssr34913	transcription start site region 34913	1406 bp upstream
Tssr34914	transcription start site region 34914	1263 bp upstream
Tssr34915	transcription start site region 34915	1042 bp upstream
Tssr34916	transcription start site region 34916	993 bp upstream
Tssr34917	transcription start site region 34917	829 bp upstream
Tssr34918	transcription start site region 34918	896 bp downstream