rs254552236 SNP Detail

Summary

• ID
  rs254552236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74793571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTCCAG ACCATAACCC
  TATGAAGTAG ATTCTGCTAG AATTATCCTG AGACGGAGAA ATAGGGCTGA GGGTGAGCAA
  ACTGGTTCAG CAAGGTTTAG GAGGGCGGGG ATACTTGAAT TCTGGTGCGC ACTGCTTCTA
  TAAGTGGGTG TTGAGAGTCA GTCAGTATAT GCACACCCCG CCATCTTCTC TCACTACCAA
  Y
  TTTTGTTGAG CATCTAATAT GTACCAGCGA CATTTAATAT ACTAGCTGAA TTTGGATACT
  GCTATTACTT GTATACAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAA GGGGGATACT GCATGGTGAA GTATTTGGAT TTAAGCTTCA GACTTCCTGG
  GTTCAAATTC TGATTCTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320348844	CHEV_2_74801284	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254552236					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74793571 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	1041 bp proximal
Rr559414	regulatory region 559414	1307 bp proximal
Rr559415	regulatory region 559415	1873 bp proximal