rs254530707 SNP Detail

Summary

• ID
  rs254530707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:134942125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAGCATAGC AGGCTAGTAT CTATTTTACT ATCTCTCTGT
  CTAGACTCTT GAGCACTGAG ATTAAAAGCT TCCACCACCA CAATTGGCTA GTATTTGGAC
  Y
  TTCTGTACAT ACATCTAAAT AGTAGGAATT GTGAATTCAG ACCCGGGCAG ATACGATCAA
  GGACACAAGT GACACATTTC ATTATATGCT TTCTTCTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320515717	CHEV_2_134925941	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254530707					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134942125 () rs orientation: forward

Symbol	Name	Function Class
Plcb1	phospholipase C, beta 1	Intron
Rr565720	regulatory region 565720	1172 bp proximal
Rr565721	regulatory region 565721	1744 bp proximal