rs254499506 SNP Detail

Summary

• ID
  rs254499506
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54496627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGATTGTG TGAGTGTGTG TGTGTGCGTG TGTGTGTGTC TGAGTGCATG TGTGTGAGTG
  TGTGAGTGTG TGTGAGTGTG TGAGTGTGTG TGTGTGTGTG TGAATGCCAT GTGAAGGCAG
  GTACCTATGG AAGCCAGAAT ATGGAGTTGA ATCCCCTAAC CTGGAGCACA GGAGGTTGTG
  R
  GCACCAGGTC TTCTGCAAAA GCAGGCAGTC CTCTTAACCA CTGAGCCATC TCTCCAGCCC
  CTACTTCTAT TATTTTTCCT GCACTGGGGA TGGAATACCT GGCCTCAATC GTGCTAGATA
  AGTGTTCTAC CCATCCCCTA CTTATTTCCT ACTTTCTGAT TATTTGTTTA CTTATTTATT
  ATTTTTACTC TTTGATTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772049	CHEV_3_54393128	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254499506					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54496627 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Gm65163	predicted gene, 65163	1196 bp downstream
Rr367440	regulatory region 367440	863 bp upstream
Rr576811	regulatory region 576811	1274 bp distal
Rr576812	regulatory region 576812	479 bp distal
Rr576813	regulatory region 576813	770 bp proximal