rs254480602 SNP Detail

Summary

• ID
  rs254480602
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152515520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGTGCA GTGCCACGCT
  ACAGCCTGGC AATGCCGACG TCCTGGAGGA TGGTTGGGGT GCGGCGAGAG GTGGGGGTCC
  TGCCCCCTCC CATGGTCTCC CCTTTGCTGC CTTTGTGTCA GAGGCCTGGG TCTTCTGAGC
  CACAGGTAGG AAAGAGCTGG CTGGGCTGTT CTTTATTTGA ATGCCAGGCA CACGGCTCAC
  R
  CGGCTTGTCC ACCCCATTCC ACGCTGTGTC TGCAGTGGAC AGCGAGGGCA CCTGTGGCAT
  GTGGCCACTG CCACAGTGGA GAGGCACACA GAGATGTCCT TCCCCTCCAT GCGGGTGCAC
  ACTATGTGGC TATATGTACA GATCGCAGCT GCCTATGCAC GGAAGGTTCT AGAAATCTGT
  TTGGGCACAC AATGCACTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434650	CHEV_4_151805172	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254480602					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152515520 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D4Mit356	DNA Segment, Chr 4, Massachusetts Institute of Technology 356			971 bp distal
Kcnab2	potassium voltage-gated channel, shaker-related subfamily, beta member 2			Intron
				Noncoding-Transcript-Variant
Rr605873	regulatory region 605873			1323 bp proximal
Rr605874	regulatory region 605874			1405 bp proximal
Rr605875	regulatory region 605875			1452 bp proximal