rs254426773 SNP Detail

Summary

• ID
  rs254426773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155688373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTTCAAG ACAGGGTTTC
  TCTGTGTAGC CCTGGTTGTC CTGGAGCTCA CTTTGTAGAC CAGGCTGGCC TCGAACTCAG
  AAATCCGCCT GCCTCTGCCT CCCGAGTGCT GGGATTAAAG GCGAGCGCCA CCACGCCCAG
  CTCTGGGTTA CTCTTTAAGA TCCTGTCTCA AAAAAGGGGA GTGGAGGTCT CACCAGCATT
  Y
  GGGTGAGACA AGCAGCTGTT GGTTTGGTAG CTTTGATGTC ATGTCTTTGC TGTGGGTCTA
  GGGCAGAGTG TGGCTTGTTT TCTTTCAGCT CTGTATCTAC ATTTATGACA GAGCCTACAG
  CAGAAACTCA TGAGACAGGC ACTGCCAGCA AGGGAGTCGT TTTGTTGTTG TTTTGAGACA
  AGGTTTCTCT GTGTAACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321442501	CHEV_4_154978025	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254426773					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155688373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15473	CpG island 15473	1579 bp distal
Rr606517	regulatory region 606517	1962 bp distal
Rr606518	regulatory region 606518	1472 bp distal
Rr606519	regulatory region 606519	788 bp distal
Rr606520	regulatory region 606520	within coordinates
Slc35e2	solute carrier family 35, member E2	Intron
Tssr40684	transcription start site region 40684	1976 bp downstream