rs254426768 SNP Detail

Summary

• ID
  rs254426768
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:34076257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTAGTAATT GATTTTGGTT GTATTGAAAA TTGAGCCTAG
  ACCTTGGCTT GTACATAGTA TGGTAGGCAT TTGTTTTTGC TATAAAGCTC TGCTCTGATG
  T
  CTTTTTCCCC CCTTCTTTGA TAGTCTGAGT AAATTGTCCA GGCTGGTCCT GAACTCACTG
  TGTAGTTCAT GCTGGCCTTG AACTTGCATT CCTCCTTTT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320700972	CHEV_3_33921030	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254426768					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34076257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	1053 bp distal
Fxr1	FMR1 autosomal homolog 1	Intron
Rr575096	regulatory region 575096	1990 bp distal
Rr575097	regulatory region 575097	884 bp distal
Tssr28791	transcription start site region 28791	1998 bp downstream