rs254420855 SNP Detail

Summary

• ID
  rs254420855
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151953138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTAGCAACT AGACAAGAGT ATTATTTCAA
  AGCTCCCAGA ATACTTCAGT TCCTTCTGGT GAatattgcc caggttggcc tctaactctt
  gactggttcg gtagtacagg ctagccttga atgtgtgttc ttccttcttc accctcctaa
  K
  tagctgaaat tctaaatctg tgcgccTCAA GTGAAATTCA CAATCTGACG TGAAAATGTC
  CTACAGCCAT ATTATTAAAT ACACTTTAAC TTACACAGAA AGAAAAAACC ATGCACTGAG
  TAATACATTT ATATTAACTT AGTATACAAT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028499	CHEV_3_151910465	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254420855					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151953138 () rs orientation: forward

Symbol	Name	Function Class
Nexn	nexilin	Intron
Rr587498	regulatory region 587498	1852 bp distal
Rr587499	regulatory region 587499	1796 bp distal
Rr587500	regulatory region 587500	1630 bp distal
Rr587501	regulatory region 587501	1338 bp distal
Rr587502	regulatory region 587502	1039 bp distal
Tssr36179	transcription start site region 36179	349 bp upstream
Tssr36180	transcription start site region 36180	304 bp upstream
Tssr36181	transcription start site region 36181	282 bp upstream
Tssr36182	transcription start site region 36182	265 bp upstream
Tssr36183	transcription start site region 36183	235 bp upstream
Tssr36184	transcription start site region 36184	455 bp downstream
Tssr36185	transcription start site region 36185	471 bp downstream
Tssr36186	transcription start site region 36186	579 bp downstream
Tssr36187	transcription start site region 36187	756 bp downstream
Tssr36188	transcription start site region 36188	824 bp downstream
Tssr36189	transcription start site region 36189	850 bp downstream
Tssr36190	transcription start site region 36190	928 bp downstream