rs254412404 SNP Detail

Summary

• ID
  rs254412404
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126389843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCATCTTA CATGCTAATT
  TTTTTTCTCC ATGCTAATTT TTAAGCAACA GTGTCAGATA TGCTTAACTG TACACACGTT
  CTTGAACTCT TAAATGGTTT TCCAGATAGC CACTGAGGGA GTACACTCCT GTGCCCCTAC
  TTGGCCTGCT CTTTGAGAAT GCAGGTAAAG AACTCCCACC CTCCCTCTCC CTTCTCCCTC
  S
  GCAACGCGAA ACAGGCTAGG CACGCTCACG TGACGCTAAT GACGTCAGCC CCCTCTGGGT
  CGCGTGACCC ACAGCCAACC TTCCTACCGC CCCACCCCCT CGCCACTGGC GTGGGACATC
  TCGCGAGAAG CCTTCTTACT ATCAGAACTT GCTGAGGTTA CAGGGGAGTT ACTCTGGAGA
  GGAAGGAAGG TGTGGCAGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359614774	MGP_WTSI_3_126299112	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254412404					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359614774	MGP_WTSI_3_126299112	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126389843 () rs orientation: forward

Symbol	Name	Function Class
Camk2d	calcium/calmodulin-dependent protein kinase II, delta	mRNA-UTR
Cpgi13785	CpG island 13785	within coordinates
Gm17225	predicted gene 17225	within coordinates
Rr367547	regulatory region 367547	within coordinates
Rr584646	regulatory region 584646	267 bp proximal
Rr584647	regulatory region 584647	692 bp proximal
Rr584648	regulatory region 584648	804 bp proximal
Rr584649	regulatory region 584649	1231 bp proximal
Tssr31566	transcription start site region 31566	132 bp upstream
Tssr31567	transcription start site region 31567	158 bp upstream
Tssr31568	transcription start site region 31568	214 bp upstream
Tssr31569	transcription start site region 31569	619 bp upstream
Tssr31570	transcription start site region 31570	767 bp upstream
Tssr31571	transcription start site region 31571	799 bp upstream
Tssr31572	transcription start site region 31572	908 bp upstream
Tssr31573	transcription start site region 31573	1044 bp upstream
Tssr31574	transcription start site region 31574	1105 bp upstream
Tssr31575	transcription start site region 31575	1221 bp upstream