rs254407595 SNP Detail

Summary

• ID
  rs254407595
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109137328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCT CTGTGGCGCC GCCTCCGCTG
  C
  CCGTCCACCC CAGAGCCCTA TCCGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321253763	CHEV_4_108952736	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254407595					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109137328 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14571	CpG island 14571	within coordinates
Eps15	epidermal growth factor receptor pathway substrate 15	137 bp upstream
Gm40225	predicted gene, 40225	within coordinates
Rr398389	regulatory region 398389	within coordinates
Rr597299	regulatory region 597299	within coordinates
Rr597300	regulatory region 597300	1 bp proximal
Rr597301	regulatory region 597301	292 bp proximal
Rr597302	regulatory region 597302	314 bp proximal
Rr597303	regulatory region 597303	639 bp proximal
Tssr38334	transcription start site region 38334	135 bp upstream
Tssr38335	transcription start site region 38335	185 bp upstream
Tssr38336	transcription start site region 38336	234 bp upstream