rs254405844 SNP Detail

Summary

• ID
  rs254405844
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:22191351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAATTGTT ACAGGTTTTT CCAAGGTTGT
  TTGGTTAGTT CAATAATCAT GATTGGtttt taaaatagtt aatttttatt ttttaaaaGA
  TGTCTCAATG GAGGATAACT TTGAACTCCA GGTCAGGTGA GCTTCCTTAG TTGTGTGTGT
  K
  GGGGGGGTTT GCATAGAAAT GATCCATCCT GCTTTTTATA TTGAGATTTT CAGAATGCTT
  ATATACAACT GTGTTTAAGA TGGTGGACCA ATATTTTTCA CCACACAAAA ATCTAAGATA
  CAGACATGGC TAGCATGCAT TAAAGCACAT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320684106	CHEV_3_22036109	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254405844					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22191351 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574211	regulatory region 574211			626 bp proximal
Tbl1xr1	transducin (beta)-like 1X-linked receptor 1			Intron
				Noncoding-Transcript-Variant
Tssr843	transcription start site region 843			517 bp downstream