rs254403351 SNP Detail

Summary

• ID
  rs254403351
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28038396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTTGAATT GCCTTTAGGG AGCCTGCCAA AGCTGAGCTT
  GGGAACAGGA CGGCTTCCCC TGTTTATGTG GATTTGTAGG GTAGCCAACT CCCCCCCCCC
  Y
  CGACTTTCAA CTGCTTTGGA CATTAGCTTC ATAGGAAGAA TTCATTCTTT AGAGTAAAAT
  GGAGCACCGC TTTTTGCCAG GGGCCCCAGG TTAGTAACG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320689851	CHEV_3_27883169	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254403351					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28038396 () rs orientation: forward

Symbol	Name	Function Class
Pld1	phospholipase D1	within coordinates
Rr574516	regulatory region 574516	1349 bp distal
Rr574517	regulatory region 574517	64 bp distal
Rr574518	regulatory region 574518	within coordinates
Rr574519	regulatory region 574519	892 bp proximal
Tssr28637	transcription start site region 28637	47 bp downstream
Tssr28638	transcription start site region 28638	25 bp upstream
Tssr28639	transcription start site region 28639	388 bp upstream