rs254381384 SNP Detail

Summary

• ID
  rs254381384
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54476194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATGGTCT TCTGGTTGTC
  TGCCTGCCTG CCCTGCTGTT GGTGGTACTG ACATTAAATA CACTGCCTCT CTCTTTTAGG
  TAGCAGGCTC CTCTAGAGAC AAACTGCTGT ATTTATAAAC CTTCAAAATA TCTTTCTCTT
  TTTTTCTAAA ATTTTCTGAC ATAAGTTGAC CATGCCCTTA CTCACCACAT GCTCTTGAAC
  R
  TGTTCTGACA TCTGGAACAA AGTATGCCCA AAGATGTGGC CTTCCTTTTT CTTTCTTGAG
  CTAGGACCTC AAAGCAGAGC GCTCAGAATG TACTACTCAA CTGAACAGCC TGGTGAATGT
  TTCTGTGGCT AAAGGGCTTC CTATGTGCAT ACACATAGGG TCCCTGGATA AAATCCCCAT
  GTTCCTTTAA TTCATGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771946	CHEV_3_54372695	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254381384					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54476194 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	1948 bp upstream
Rr576807	regulatory region 576807	1045 bp distal
Rr576808	regulatory region 576808	379 bp distal
Rr576809	regulatory region 576809	1908 bp proximal
Tssr29130	transcription start site region 29130	1124 bp upstream