rs254367351 SNP Detail

Summary

• ID
  rs254367351
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43960250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATCAGA AGGGGGAAGC
  TAGAGCTAGC AAGTGGAGAG ATTGCCTCGA TACAGAGGAC AGTACTGCAA GCACCTAGGG
  CTATGCTTCT TAAACTTTGT CTATTTGTGA AAGAAAGCCC CGCCCTGGAT TGTTATACAG
  CTCCAGGTGT ATGAGCTTAA ACTAGCATAA AATCAAACGT TTAATGATAA CAGTTCATAC
  R
  GAAATTCGTT GTATTACTGT GTGCGTTCTG TGTGTTCTGG TGGCTTCCCC GGTCACTCTC
  CTTATCTTTT CAGACAGGGT CTCCTTCTGA ACCTGGGGTT GGCTGATTCA GATGGACTGG
  TTGGCGGTCC AGCCCCAGAA CCCCAGGATC TTCCTCCCTG CCTTTCTAGC TCTGGGATTA
  TACAGGCATG GCTGCTGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321099585	CHEV_4_43973122	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254367351					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43960250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14202	CpG island 14202	1820 bp distal
Glipr2	GLI pathogenesis-related 2	Intron
Gm30377	predicted gene, 30377	within coordinates
Rr398233	regulatory region 398233	419 bp downstream
Rr591113	regulatory region 591113	1738 bp distal
Rr591114	regulatory region 591114	1425 bp distal
Rr591115	regulatory region 591115	453 bp distal
Rr591116	regulatory region 591116	within coordinates