rs254359007 SNP Detail

Summary

• ID
  rs254359007
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32583454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAATCAA GACCAGAGCA
  ATTGGAAAAG TCAAAGTTTT GACGACCCCC CCCCCCCCCC CCGCATGATA AACATCTATG
  TGGTTTTGGG GTACTTCTCC CCCTACACCC TCAGATAACC ATGGACATCT TTTCACACTT
  GGCGCCTTTG AGCTTTGAAA ACTCTGAAGG GAAAAACCAA GGGGAGGAGT TGGAAGGTGG
  W
  ACAGAAAACA GCCCAGTGGT TAATAAGAAC TCCTGCCCAA AACAAACCTC GCCTTCAGCC
  CTGAAGGAAA ATGGCGCCCG CAATATATGC AGTTCTGGTC TCGAAGCGTC AGCCAATAGG
  AGATCCGAAG CGCCGGAAGT AGCCGCCCCT AGCCCCTCCT CTGGGCACCT CCCCTCTTTC
  GGGAGGATGA GACAGCCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss357466961	MGP_WTSI_3_32428227	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs254359007					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357466961	MGP_WTSI_3_32428227	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32583454 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13058	CpG island 13058	22 bp proximal
Gm66043	predicted gene, 66043	within coordinates
Mfn1	mitofusin 1	160 bp upstream
Rr397636	regulatory region 397636	within coordinates
Rr574980	regulatory region 574980	1742 bp distal
Rr574981	regulatory region 574981	within coordinates
Rr574982	regulatory region 574982	171 bp proximal
Rr574983	regulatory region 574983	276 bp proximal
Tssr28756	transcription start site region 28756	147 bp upstream
Tssr28757	transcription start site region 28757	227 bp upstream
Tssr28758	transcription start site region 28758	252 bp upstream
Tssr28759	transcription start site region 28759	274 bp upstream
Tssr28760	transcription start site region 28760	333 bp upstream