rs254347444 SNP Detail

Summary

• ID
  rs254347444
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:121068602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGACCG GAGAAGAAGC
  AGCAGGGAAA CAGTAGGAGC AGCAGGGAGA CAGAGGAGAA GCAGCAGCTG GGAGACAGAG
  GAGAAGGAGC AGCAGGGAGA CAGAGGAGAA GCAGGGAGAC AGGAGAAGAA GCAGCAGGGA
  AAGTGTAGGA GCAGCAGGGA GACAGAGGAG AAGCAGCAGC TGGGAGACAG AGGAGAAGGA
  S
  CAGCAGGGAG ACAAAGGAGA AGCAGGGAGA CAGAGGAGAA GCAGCAGCAG GGAGAAGGGA
  TCAAAGGTTG GCCAAGAACT GACCATGACT GAGAGAACAG CGCCAGCCTA CACACCTGAC
  TCTTATGTTT GACATCTTCC AGTGTAGAAA AACGTCAGTG AAAGGGTTAG CCTGGGCCGT
  TGGTTTAGAG GCTCACAGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss379183273	MGP_WTSI_9_121148654	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C	G	C	C	C	G	G	C	C	C	G	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs254347444					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C	G	C	C	C	G	G	C	C	C	G	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379183273	MGP_WTSI_9_121148654	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121068602 () rs orientation: forward

Symbol	Name	Function Class
Rr688903	regulatory region 688903	1082 bp distal
Rr688904	regulatory region 688904	808 bp proximal
Rr688905	regulatory region 688905	932 bp proximal
Ulk4	unc-51-like kinase 4	Intron