rs254342755 SNP Detail

Summary

• ID
  rs254342755
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130550323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTATTAAA GTAAGGTTTG
  AAAAATCTAA GCCTATGCCA CCATGCCCAG CTAATGGAGA CTCTTTAATT TATAGTACTT
  ATATGACTAC CCTGTGAAAA AAAGAAAGAA AGAGAAAAAA AAAAACCAGT ACAGTAACAA
  GATGAAAACT ATGTGAGCAA ATGTGCTTTC AAATAATCCT AAACTGTACC AGACCAAAAA
  R
  AAAATCATTT TTGCAGTAAA TTTCAGTGAC AGGATTCAAA GGCTATTAGA ACACACACTG
  GAAACTCCAT CTTAAGTAAG GGTAATTTGT TCTGGGTCTA TAACAAGGCA GCTTCAGATG
  TTTTTATGGT AGTTCATTTG ATTACTCTAA AGTTGTTGAT TACTCTAAGG TTGTAATGGT
  ATGTGGCAAC CCACTTAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320966481	CHEV_3_130459592	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254342755					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130550323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13827	CpG island 13827	1627 bp distal
Gm42997	predicted gene 42997	within coordinates
Gm43524	predicted gene 43524	787 bp upstream
Gm65129	predicted gene, 65129	1915 bp downstream
Rr585206	regulatory region 585206	734 bp proximal