rs254339200 SNP Detail

Summary

• ID
  rs254339200
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165469877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATACAT ACATTATATA
  TACATACATA CACACACACC ACATATACAC ACAGGCACAC ACACAGACAC ACATAGACGC
  ACATATACAT GGGACACACA CCACATACCA AACACCACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACTGCCCTTG TAATGACACG TCTCTTCCAG GGCTGAGATG
  M
  GAATGAACAG AACAGCGTGG TTACAATGGC TGTCTTGCCT GTTTGCTACC TTTCAATGCT
  CTGCATTCTC TCTCAGGAAT AGGGGACCAT GACAGCATGA ACAGGAAGCC TCTTGGTGGC
  GATATGATCT TGGGTTGGTG TCCTCCCATC CTCAGGTGCC TGGCAGCCGC TCGCCTGTGT
  GTCCTCTGAG TCAGCACCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320608517	CHEV_2_165453457	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254339200					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165469877 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	830 bp distal
Rr569966	regulatory region 569966	within coordinates
Rr569967	regulatory region 569967	105 bp proximal
Rr569968	regulatory region 569968	1950 bp proximal