rs254326830 SNP Detail

Summary

• ID
  rs254326830
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18418860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGGGGAGG GGGAGGAGGA GGTTCCTCCC
  AGAAGTAGCC AGGCAGGCAA ACACCTTAGG TCAGAGACCT CTGATTTACC TCTGTTTTCT
  TCCTAAGGCT GGGTGTATTC ATAACCCACT CCGCATATCT CACAGAGATT TTATCTATTT
  W
  CTTATTTATT TAATGGTTTT GGAGATGGTT GTGATGTGAA CAGCAGTCCC CCTTGTCACC
  AAGATTGCCA GTCTCTAAGC AACTACATGT TCAGACTTGA ATGGCTTACA CTTTCCATTT
  TGGTTTCCTA AAATATTGTA TACTGTACAC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321758115	CHEV_6_18368861	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254326830					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18418860 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Rr379006	regulatory region 379006			within coordinates
Rr626921	regulatory region 626921			457 bp distal