rs254321099 SNP Detail

Summary

• ID
  rs254321099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:104966169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTAGTTC TGTTAAAAGG
  ACGGGTAATC AAACCCCATG TGACTCTTAT TAACTAATAA GAAAGCAAAG CAAAGTTTAA
  TACTTAACTA GTTTAGTGCA GTGTGACATT TCAAAAGCAA CCAGTTTTTT TCCAAAACCC
  CCAAAGCAGT CCCTTCACCA ACAAACATAC CCCTTGCCTA AGCAAGTCTG ACCTCTTGGG
  R
  ACCCAAAGTC GATCACCAAG CAACATTTTC TCCCAGACCC TGACCACAGA ATCCTTCCTT
  GAACCAATCA ACCTACAGAG CTAGGGGTTC TCCTAAATTC TCTGTCCAAC CCGCTGCATT
  CCAGCGTTTT CACACACCCA GCAGAGGGAC TTGGCACCTC TCTGCTATGG GCATGCCCCT
  GGTCAACTCC ACCATCAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362703154	MGP_WTSI_4_104781577	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254321099					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362703154	MGP_WTSI_4_104781577	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:104966169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14519	CpG island 14519	115 bp proximal
Gm36893	predicted gene, 36893	990 bp upstream
Prkaa2	protein kinase, AMP-activated, alpha 2 catalytic subunit	Intron
Rr596533	regulatory region 596533	170 bp distal
Rr596534	regulatory region 596534	within coordinates
Rr596535	regulatory region 596535	908 bp proximal
Rr596536	regulatory region 596536	960 bp proximal
Tssr42616	transcription start site region 42616	760 bp downstream
Tssr42617	transcription start site region 42617	831 bp downstream
Tssr42618	transcription start site region 42618	857 bp downstream
Tssr42619	transcription start site region 42619	1100 bp downstream
Tssr42620	transcription start site region 42620	1624 bp downstream