rs254317919 SNP Detail

Summary

• ID
  rs254317919
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58324046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCAGCC CACTCTCGCC
  CAGCCGCAGA GTTTCAGCGT CGGGCAGCCG CAGCCTCCAC CGCCCGTAGG TGGGGCTGTG
  GCTCCAAGTT CGGCGTCGCT GCCGCCGTTC CCGGGAGCGG CGACCGGGCC GCAGCCAATG
  ACAGCAGCCG TTCAGCCAAC CCAGCTCCAG GGAGCCGTGG CCGGAGGCGC CCTCCCCGGG
  S
  CTGTCGGTCA GGGGCTGCCG CCGCCGCCGA ATGTCAACCT GGCGCAGCCT GTGGCCCTGG
  CAGCTCAGCC CGGCCCGGCC GGCGGCTCCT CGTTGTCACA GCAGTTCGCC TATCCCCAGC
  CTCAGATACC ACCCGGGCAT TTGTTGCCGA TGCAGCCATC CGGCCAGAGT GAGTACCTGC
  CGCCGCACGT GGCCCTGCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358098078	MGP_WTSI_3_58220547	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254317919					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358098078	MGP_WTSI_3_58220547	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58324046 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13200	CpG island 13200			within coordinates
Gm65073	predicted gene, 65073			1971 bp downstream
Rr577221	regulatory region 577221			1895 bp distal
Rr577222	regulatory region 577222			1499 bp distal
Rr577223	regulatory region 577223			263 bp distal
Rr577224	regulatory region 577224			404 bp proximal
Tsc22d2	TSC22 domain family, member 2			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Tssr29198	transcription start site region 29198			1886 bp downstream
Tssr29199	transcription start site region 29199			1854 bp downstream
Tssr29200	transcription start site region 29200			1831 bp downstream
Tssr29201	transcription start site region 29201			1796 bp downstream
Tssr29202	transcription start site region 29202			1301 bp downstream