rs254316465 SNP Detail

Summary

• ID
  rs254316465
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83435061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTGTCTG GGACTTCCCT
  CGGGCATGCC TGATATTTGA CAACCTGTTC CACTGTCCAG CTTGTCTGCC GAGTGTGTGG
  TGAGCATGGC TACTTCCTAC CACGGCCTTT GGATGTACCC AAGAGTTTCT GCCCAGAGGA
  GCGAAGAGTA GAAACAGCAA TATGGAGAAG TTGTGGACTT GGCACACATA TGCACTCACG
  M
  ACACACTAAA AAATAGGTGA ATGATTAAAA ATGTTTAATG TCACTTACGT GGCTACACTC
  CTGCAGATAA TGCAATTTAC CATCCTCCTT TCGCTTGCCT ATTATTTGAT AGACGGGCTG
  GATGTGAGGT GAAGAAAATA GCTTGAGTAT TAGAGATGTC TGACTTCCAG ACTCGCCTCT
  AGCACTGGCA ACCTTGAACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369031921	MGP_WTSI_6_83408073	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254316465					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369031921	MGP_WTSI_6_83408073	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83435061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17604	CpG island 17604	647 bp distal
D6UmiJ2	DNA segment, Chr 6, University of Michigan Jones 2	233 bp distal
Gm67132	predicted gene, 67132	499 bp upstream
Rr632869	regulatory region 632869	1197 bp distal
Rr632870	regulatory region 632870	1054 bp distal
Rr632871	regulatory region 632871	17 bp distal
Tet3	tet methylcytosine dioxygenase 3	Intron
Tssr61653	transcription start site region 61653	1687 bp upstream
Tssr61654	transcription start site region 61654	1658 bp upstream
Tssr61655	transcription start site region 61655	1635 bp upstream
Tssr61656	transcription start site region 61656	1555 bp upstream
Tssr61657	transcription start site region 61657	1510 bp upstream
Tssr61658	transcription start site region 61658	1273 bp upstream
Tssr61659	transcription start site region 61659	1217 bp upstream
Tssr61660	transcription start site region 61660	862 bp upstream
Tssr61661	transcription start site region 61661	536 bp upstream
Tssr61662	transcription start site region 61662	1026 bp downstream