rs254310642 SNP Detail

Summary

• ID
  rs254310642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131793381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAA TATCAAAAAT GTCAGCTATT
  Y
  CTTTAAAGGA CTGCAAAGGC TTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320968640	CHEV_3_131750584	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254310642					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131793381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13841	CpG island 13841	1425 bp distal
Cpgi13842	CpG island 13842	54 bp distal
Dkk2	dickkopf WNT signaling pathway inhibitor 2	Intron
Rr585413	regulatory region 585413	within coordinates
Rr585414	regulatory region 585414	419 bp distal
Rr585415	regulatory region 585415	153 bp distal
Tssr31749	transcription start site region 31749	1806 bp downstream