rs254303408 SNP Detail

Summary

• ID
  rs254303408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:33608957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCAAGAC ATAGTCAGCT
  GCTGTGGACA GTCTGAAGTA GGCCCACATC CCACACCTGG GATTAAAACG AGAACATATT
  CTTAAAACAT TTCTGTGTGT TTTAAATAAT TATTTATTTA TGTATCTGTA GCTGTTTTCA
  CACATACAAG AAGAGGACAT CAGATTCCAT CACAGATGGT TGTGGGCCAT AGTGTGGTTG
  Y
  TGGGAATTGA ACTTAGGACC TCTGGGAGAG CAGTCCAGCC CCATTTTTGT GTTTTTTAAG
  AAAACCAAAA TCCCAAAATT GTCGCTACAT CAATCAGCTC CAGGTTCAAG GAGAGATCTT
  GTCTCAAAAA ATAAAGAAAA GAGCACACGT GCTTGCAAGC ACGTGCATAC ACACACACAC
  ACACACACAC ACACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325139908	CHEV_16_33788673	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254303408					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:33608957 () rs orientation: forward

Symbol	Name	Function Class
Gm15657	predicted gene 15657	within coordinates
Gm15658	predicted gene 15658	within coordinates
Rr391607	regulatory region 391607	1580 bp upstream
Rr515038	regulatory region 515038	1479 bp distal
Rr515039	regulatory region 515039	989 bp distal
Tssr140846	transcription start site region 140846	1568 bp upstream
Tssr140847	transcription start site region 140847	1455 bp upstream
Tssr140848	transcription start site region 140848	1411 bp upstream