rs254263787 SNP Detail

Summary

• ID
  rs254263787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:67512792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGCCAGCAG TAGCAGTAGC AGCGGTGCTA
  GATCCAAGCC CCTCGCCATG GTGGGGTGGA GTAGAATGGA CCTCCAACTA CAGACCAGAG
  GCAGGGATTC TGAAGGATCA GGCTGGGTAG GACACTGCAG GCGACTCCTG CCGGGCTTTT
  Y
  CCTCCAGCTC TTATAAGCTC CTGTACCTGT AGGACTGGTT AGCTAGTGAC TCACTCAATG
  GAATTTGGGT GGCGCTCCCT ATTCCCAGGT CCCGCGGAAG AAGCCGGCAG CCCTGAGCTG
  CCTGAGATAG AATCAGGCAG GGGAGATTGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812333	CHEV_6_67485802	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254263787					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67512792 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	within coordinates
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	996 bp distal
Rr631669	regulatory region 631669	553 bp distal
Rr631670	regulatory region 631670	2 bp distal
Rr631671	regulatory region 631671	within coordinates
Rr631672	regulatory region 631672	150 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	mRNA-UTR
Tssr1871	transcription start site region 1871	1990 bp downstream
Tssr1872	transcription start site region 1872	1027 bp upstream
Tssr61255	transcription start site region 61255	1063 bp upstream
Tssr61256	transcription start site region 61256	582 bp upstream
Tssr61257	transcription start site region 61257	111 bp upstream
Tssr61258	transcription start site region 61258	6 bp upstream
Tssr61259	transcription start site region 61259	20 bp downstream