rs254219474 SNP Detail

Summary

• ID
  rs254219474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130488480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGTGTG GGAGACTCAA
  CCGAGGGACA AATCTTGTAA ACTTACAAAT TCTATGATCA GAATGAATTG AGCTATGAAA
  GAAGTGAAGG CCACGGCCTG TTAGAGAACT AAAAGACCTG GCCAGAAAAA CTATACAACC
  AGACTGGTCT AGAGATGTGT CCAGGACATG TTACTGATAG CCAATGAGAA AGGAACTGTC
  Y
  CCTACCAGTC AGCCAATGAG AAAGGAACTG CCCCTCCCAG TCAGCCAATT AGAAAGGGAC
  TGCCACCTCC AGTCAGCCAA TGAGAAAGGG ACTGCCACCT ACCAGTCAGC CAATGAGAAA
  CTACCAGTCC GATGAGCGTA CACGTTGTGA TTGCATCATG GAACTGTGGA ACCACTGCCT
  CAGGAAGCAC CCTAATGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359720696	MGP_WTSI_3_130397749	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	T	T	T	T	C	C	T	T	T	T	C	C	C	T	T	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254219474					SNP	C	C	T	C	T	T	T	T	C	C	T	T	T	T	C	C	C	T	T	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359720696	MGP_WTSI_3_130397749	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130488480 () rs orientation: forward

Symbol	Name	Function Class
Gm65113	predicted gene, 65113	233 bp downstream
Ostc	oligosaccharyltransferase complex subunit (non-catalytic)	1086 bp downstream
Rr398016	regulatory region 398016	492 bp downstream
Rr585194	regulatory region 585194	478 bp distal
Rr585195	regulatory region 585195	597 bp distal
Rr585196	regulatory region 585196	within coordinates