rs254209128 SNP Detail

Summary

• ID
  rs254209128
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70492838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACCAGG GGTCAAAGAC
  ACATCCGCCT GTGAACGGTC CTTTCCTCGT GGAACCAGGA ATGTGGTGAC ACCTGTGTGA
  GTGCTAACAT GGGCTGTGAA CAGAGTGGCC TCAGTCTGCA TCGCCATTTA GGGACAATCT
  TCTCTGAGAG TGTGCTTGCT TACCTTCATT TTCTGCCCTG GGTCGCATGT TCTGAATGAG
  R
  TAACGTTTTA AAATAGCCCA GATACCTGAA CGATAGGACT GTGATTGGTC ACCTGGTTGT
  CGGGATTGTG GTTGTCTCTC CATTCCACTC AAAAGAGACT TTTGAAGCCC TTGTTTTTCC
  AGGGTGTTTC TTCATATGCC ATATTACTTT CCTATTTCCT TCAGCTAACC AAACTCCTAA
  ATCCCACACT AATAGGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354398836	MGP_WTSI_2_70500551	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254209128					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354398836	MGP_WTSI_2_70500551	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70492838 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11730	CpG island 11730			94 bp distal
Gm26558	predicted gene, 26558			385 bp upstream
Gorasp2	golgi reassembly stacking protein 2			Intron
				Noncoding-Transcript-Variant
Rr397027	regulatory region 397027			1226 bp upstream
Rr558587	regulatory region 558587			894 bp distal
Rr558588	regulatory region 558588			1141 bp distal
Rr558589	regulatory region 558589			969 bp distal
Rr558590	regulatory region 558590			549 bp distal
Rr558591	regulatory region 558591			within coordinates
Rr558592	regulatory region 558592			1299 bp proximal
Rr558593	regulatory region 558593			1486 bp proximal
Tssr18225	transcription start site region 18225			1034 bp downstream
Tssr18226	transcription start site region 18226			1012 bp downstream
Tssr18227	transcription start site region 18227			1000 bp downstream
Tssr18228	transcription start site region 18228			942 bp downstream
Tssr18229	transcription start site region 18229			802 bp downstream