rs254191086 SNP Detail

Summary

• ID
  rs254191086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110149527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAATAGC ATTTAACCTC
  CTCGCATATA TTAAGTTTCA AGTGACAATT TTTAACTGGG GAGTGAGAAG GAGGAGTTGC
  TCTCATCAAA CTCTGGTTGT ATGAAATAAG CTAATTTGTA CACTCACCAT ATGTCTTAAA
  CACTAATTAA AAAATGTCAC TTTCTTCAAA CATTAAAATG TAATCAGCCT AGTAAATAAA
  R
  TATTCTCGAG TTTTCTTGCC TTGGTGATAA TTTAAAGAGT GTTTATCTCA AGGTAACCTT
  TCTAACTTGA TTACCAAGGA AGACTCTAGA TTTCAAAAGG GAAAAAGGAA ATGCTAAGGG
  TCAGGGCTTT GGGGCAGGGA AAAGAGAAAA CCACTACTGT ACGAAGCTGC ACAAAGGAAA
  ATAAGATGAA GCGGGGGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255958	CHEV_4_109964935	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254191086					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110149527 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Elavl4	ELAV like RNA binding protein 4			Intron
				mRNA-UTR
Rr597421	regulatory region 597421			1568 bp distal
Rr597422	regulatory region 597422			within coordinates
Rr597423	regulatory region 597423			382 bp proximal
Tssr42791	transcription start site region 42791			1417 bp upstream
Tssr42792	transcription start site region 42792			1398 bp upstream
Tssr42793	transcription start site region 42793			171 bp downstream
Tssr42794	transcription start site region 42794			389 bp downstream