rs254185787 SNP Detail

Summary

• ID
  rs254185787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99568444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTTCCTT TCATCCAAAG
  CTAGAGCTGA TTGAGAACTC ATGGTTTCAA CATCACTGGT TTTCTTTTCT GGACCAAAGT
  CTTCCTTTAT GGGTATGAAG CCCGTGCTTT TCTCTTCCTG TTTGTCTTGG TAAAGACCAG
  TGGAAGTCAG GTCAGAAACT GGGCTTTCTC TGTCTGGGAA GCCCTGCTTT CCATTCTTCC
  Y
  TTCAAAGGGG CTTTCGGAAC GTCTGCCAAG AACCTTGCTA TCAGCACTCA GGAAGTCTTC
  ATATGGGGAC TCAGATCCAA GAAGGGGAGG ACTGCGTAAA GGAGACAGAA CCTTCTCCAC
  AGGAGACTCT GAGTCAGGCA CAGGCTCATC CATGGGGCTT AGGGACGCTC TCTCGTTCTC
  ATCTTTGGCC TCACTGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389674859	MGP_WTSI_13_100201891	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254185787					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389674859	MGP_WTSI_13_100201891	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99568444 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-NonSynonymous
Tssr123697	transcription start site region 123697	1844 bp upstream
Tssr123698	transcription start site region 123698	1694 bp upstream
Tssr123699	transcription start site region 123699	1610 bp upstream
Tssr123700	transcription start site region 123700	1563 bp upstream
Tssr123701	transcription start site region 123701	1538 bp upstream
Tssr123702	transcription start site region 123702	1519 bp upstream
Tssr123703	transcription start site region 123703	1467 bp upstream
Tssr123704	transcription start site region 123704	1411 bp upstream
Tssr123705	transcription start site region 123705	1110 bp upstream
Tssr123706	transcription start site region 123706	883 bp upstream
Tssr123707	transcription start site region 123707	691 bp upstream
Tssr123708	transcription start site region 123708	493 bp upstream
Tssr123709	transcription start site region 123709	321 bp upstream
Tssr123710	transcription start site region 123710	872 bp downstream
Tssr123711	transcription start site region 123711	1078 bp downstream
Tssr123712	transcription start site region 123712	1308 bp downstream
Tssr123713	transcription start site region 123713	1523 bp downstream
Tssr123714	transcription start site region 123714	1563 bp downstream
Tssr123715	transcription start site region 123715	1596 bp downstream
Tssr123716	transcription start site region 123716	1660 bp downstream