rs254167779 SNP Detail

Summary

• ID
  rs254167779
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:104196232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTGGTC TAGACAGATG
  ATTGTAAAAC ATCTGTCGAG AAACAAAAGA CGTGTAACTT CAAGAGTTTT GTGACTACAG
  TTTTCTTTAG GAGCTTGGCC CCTCATCCAC TGATCACCTT CCATGCCCAT GTTTATGTAG
  GTAGCACTAA TTAGACTATC TTAAAAGGCT ATCTAAAAGG AAACAGAAGG AGCCAGAAGA
  S
  GGGGCTGGAG AGATAGCTCA GCAGTTAAGA GCTCGAATGG ACTGGAAGAT GATCCCTGTT
  CATTCTTGGT TGCCAGGTCA GGTGTAAACT CCTGCTCCAT TGTCAGCTCT GCGCCCCTGT
  GCAGGACCCA TGCATGAACA CACACATGTA ATCAAAAATA AAATATAAAA ATGTAGGAGA
  ACATGACTGA TGGGGTGGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366114249	MGP_WTSI_5_104477385	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254167779					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366114249	MGP_WTSI_5_104477385	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:104196232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16142	CpG island 16142	814 bp distal
Gm43545	predicted gene 43545	969 bp upstream
Mir5619	microRNA 5619	303 bp downstream
Nudt9	nudix hydrolase 9	Intron
Rr399211	regulatory region 399211	1617 bp downstream
Rr616018	regulatory region 616018	1487 bp distal
Rr616019	regulatory region 616019	within coordinates
Tssr47616	transcription start site region 47616	1805 bp downstream
Tssr47617	transcription start site region 47617	1556 bp downstream
Tssr47618	transcription start site region 47618	1467 bp downstream
Tssr47619	transcription start site region 47619	1452 bp downstream
Tssr47620	transcription start site region 47620	1391 bp downstream
Tssr47621	transcription start site region 47621	1322 bp downstream
Tssr47622	transcription start site region 47622	1293 bp downstream