rs254130596 SNP Detail

Summary

• ID
  rs254130596
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154799702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTGCTTC AAGGAGATTC
  AACCAAAGGT GCCAGATATT GGAAAGAACC AGTCTTACTT AATACACTTT CATAGAGTGG
  TTATATGTGT TTCTCTTGTA GAGTGCATAA GTTTATATCG AGTACTACAG GTTGATCTCT
  TTAATCTTTC ACATAGTACA TAGAGAGGAA CGCTATTTGA GGAAGCCATT TCAGTCTGAA
  W
  CCCAGAAATC TTACCACTAC AATTTGACTT GAGAAGCTTC TCTTCTTTAA AATCTAACTC
  AGAATTCTGC ATAGCAGCTC CCTATGAACT TTTAAGTTTC TGAGTAAGCT TAGTTTTTCA
  CTTAAAGCCT TGACCTCAGC ATTTAATTCT GTATTTAAAG TGGACACATT TGTGGGGAGG
  AGATAACTGT TTCACAATAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360335705	MGP_WTSI_3_154757029	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254130596					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360335705	MGP_WTSI_3_154757029	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154799702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13973	CpG island 13973	263 bp distal
Fpgt	fucose-1-phosphate guanylyltransferase	678 bp upstream
Gm26456	predicted gene, 26456	1937 bp downstream
Gm37482	predicted gene, 37482	800 bp upstream
Lrriq3	leucine-rich repeats and IQ motif containing 3	Intron
Rr398138	regulatory region 398138	515 bp downstream
Rr587919	regulatory region 587919	673 bp distal
Rr587920	regulatory region 587920	467 bp distal
Rr587921	regulatory region 587921	within coordinates
Tssr32470	transcription start site region 32470	590 bp downstream
Tssr32471	transcription start site region 32471	521 bp downstream
Tssr32472	transcription start site region 32472	492 bp downstream
Tssr32473	transcription start site region 32473	468 bp downstream
Tssr36282	transcription start site region 36282	825 bp upstream
Tssr36283	transcription start site region 36283	680 bp upstream