rs254121432 SNP Detail

Summary

• ID
  rs254121432
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:99048268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGCTCC CAGATGTTCT
  TGTTTTCTAG GTCAAGTCTC TAAGATCCTA GATTTCAAAA ACCAATTGTT CTTTTAACCA
  AGTGAAGGTA GCATAAGGGC TATCATTAAT CTATCTATAA ACCCTTCATG CCCAGGAAAA
  AATAACTCTC CTCCTCCTCC TCCTCCTCCT CCTCTTTTCT CATTTTTGGT TTTCGAGACA
  K
  GTTTTTTTCC TGTATAGCCC TGGTTGTCCT GGAACTTACT CTGTAGACCA GGCTGGCCTC
  AAACTCAGAG ATCCTCCTGC CTCTGCCTCC CAAGTGCAGG GATTAAAGGT GTGTGCCACC
  ACTGCCTGGC AGGGACAAAT AACTTTTTGG AATGTTCCAT TTGATGTTCA TGTAAGATAA
  TAAATCATGT GTTTTCACTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321222989	CHEV_4_98826722	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254121432					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:99048268 () rs orientation: forward

Symbol	Name	Function Class
Gm12681	predicted gene 12681	within coordinates
Rr376904	regulatory region 376904	914 bp upstream
Rr595834	regulatory region 595834	311 bp proximal
Rr595835	regulatory region 595835	1337 bp proximal
Rr595836	regulatory region 595836	1601 bp proximal
Tssr37925	transcription start site region 37925	1250 bp downstream