rs254119966 SNP Detail

Summary

• ID
  rs254119966
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101103153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACACATCA TCCGTACTCG TTCCAGATTG
  TAAGAGGATA AACAGAGCCA CCTCACAGCA ATCGGCACTC ATGCAACTCC GAAACACTTT
  ACTCAAAGAA CATCTTGAGA GTAAACAGAC TCATGAACTG ACAGGATGAT TAGGGACTGC
  R
  AGTCAAAATC TGGTGCCCAG TATCCATGGC AGGCCAAGGC CAAACACACG AAAGAACATC
  ATTGTGTATT TAAGATAAAG GATAGTTTTC AAGGGAAAAG ATGATTACAG TTTTGGACTT
  GTCTAAATTA GAATTATCTA TAAAACTGTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229172	CHEV_4_100918561	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254119966					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101103153 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Jak1	Janus kinase 1			Intron
				Noncoding-Transcript-Variant
Rr596098	regulatory region 596098			1079 bp distal
Rr596099	regulatory region 596099			462 bp proximal
Rr596100	regulatory region 596100			1460 bp proximal