rs254115124 SNP Detail

Summary

• ID
  rs254115124
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151944294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACAAATG ACAAATGAAG
  GAGTAGTGTG ACATTGCTTT TATCAACGAC ACCTTGGCTT CTTCTAATCC TGAAGCCACC
  AATAACATAC ATGGGTAGGT ATGTACAGAT ACACACATTC TGGCAAATTA ACACTCCACC
  CACTCTGACC ATAGAGCTGC CACCTGACCC TTCTAACTTC TTCTGGGTAT GTATAGAATG
  Y
  TATTGCACAT ATGCACAAAG TGGTCTGTGT GTGTCAACAA CTGTGTCGAG CACCCAATTT
  CCGTGATGTC AAAGAGAACC AGAACAGCAA AAAGTAGAGA AATTGCCCCT TTGCTTGAAA
  GGTGCAAGAT CCAAAGAAAT GTTTTGATCC CACTAGAGAC ATACCAGGGC CAAAGGAAGA
  TTCTGGTACA ACAAGGAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363699442	MGP_WTSI_4_151233946	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254115124					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363699442	MGP_WTSI_4_151233946	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151944294 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9230110K08Rik	RIKEN cDNA 9230110K08 gene			1887 bp upstream
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Cpgi15375	CpG island 15375			703 bp proximal
Gm42357	predicted gene, 42357			within coordinates
Rr398891	regulatory region 398891			1894 bp upstream
Rr605651	regulatory region 605651			592 bp proximal
Rr605652	regulatory region 605652			1314 bp proximal
Rr605653	regulatory region 605653			1899 bp proximal
Rr605654	regulatory region 605654			1948 bp proximal
Tssr44794	transcription start site region 44794			1830 bp downstream
Tssr44795	transcription start site region 44795			1861 bp downstream
Tssr44796	transcription start site region 44796			1925 bp downstream