rs254097304 SNP Detail

Summary

• ID
  rs254097304
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81823213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCACTC CCCATGGTGG
  AAAGGTCCAT TCAAATTGGG ATTTACCCCT CAAATCAGAA CAAACCCAAA TGAAATCTGC
  ACAAACCTAA TAGATCTACC AGCCATGGAA GAATGCCAGT CACCAACTTC AAAAAGAACC
  TGACTCCTCA AGGGGGCACG GGTTGAGGCT GTGCCGTTTA AACTTCTATT GGGCACAGAG
  R
  TCAGCAGCTG AACATCTCCT ACCCAGCCAC AGACTAGTCC AGGACAAGGG AGACCATCTT
  CCCCTAAACC TTTAGTGGGG ATGGGATAGC AGAGGAGACT GGGCATTTTG CTGTGGTCAC
  CACTGTCACA CCACCTACCT CTGTCTGGTG TCAGTAAGCC CTTGGCTAAC TAGGACAAAG
  AGTGTTGAGT CACATTTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372085462	MGP_WTSI_7_89318351	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254097304					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372085462	MGP_WTSI_7_89318351	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81823213 () rs orientation: forward

Symbol	Name	Function Class
Gm45089	predicted gene 45089	within coordinates
Gm73333	predicted gene, 73333	within coordinates
Rr650249	regulatory region 650249	841 bp proximal
Rr650250	regulatory region 650250	1342 bp proximal
Sh3gl3	SH3-domain GRB2-like 3	1368 bp upstream
Tssr67529	transcription start site region 67529	333 bp upstream
Tssr67530	transcription start site region 67530	1333 bp upstream
Tssr67531	transcription start site region 67531	1361 bp upstream
Tssr67532	transcription start site region 67532	1405 bp upstream
Tssr67533	transcription start site region 67533	1722 bp upstream
Tssr67534	transcription start site region 67534	1741 bp upstream
Tssr73370	transcription start site region 73370	1233 bp downstream