rs254085342 SNP Detail

Summary

• ID
  rs254085342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32360755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGCTAC CTCACAACTG
  TAATTTTGCT ACTGTTATTT ATTGTAATGT AAATATCTGA TATGCAGGAT ATCTGATATG
  TGATCCCTGT GAAAAGGTTC GTTTGACCCC CAAATGTGGT TATGACCCAC AGACTGAGAA
  CCGCTGGGCT AGATCAAAGA CAGCTTGGCA TGGGAGGTGA TATCTGAATT GAGAAGGAGC
  Y
  GACAGGATGG GGAAGAGGAT AGGTAAAGAT GCAGTGCACA GAGGGTATGC CCTGTTTGGT
  TAGGACAGTG GGAACAGCAC CACAATCCGG GTAAGCAGAG TGCAGCTTAA GAGTCAGGCA
  TATATGGATA GAGTGAAGGT GAACTTACAT GGGATTTAGA AAGAAAACAG CTAATGAAAT
  GAAGGGAAGC CTGAGAACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321777886	CHEV_6_32333820	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254085342					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32360755 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Rr628101	regulatory region 628101	1834 bp distal
Rr628102	regulatory region 628102	1227 bp proximal