rs254082688 SNP Detail

Summary

• ID
  rs254082688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144112913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACGCGCAC CGCGGCCCGG
  GCAATTTATG GCTCAGCCAG AGTCCAAGAT GGCGAGCGGC GGTGACGTGC GCGAGATCTC
  GTGAGCGCGA CAACGCGCGG CTTGACGGCG CCCGCGCTTC TGCTTCGGGG GCGTGGAGGG
  GATGGCGCCT CACAGGTGCG ACGGGAACGC CGTAGTGCAT GCTGGGGCCG CCTCGCTTTG
  R
  GAAAGCGCGG GACCGATGAA AGTACGGGTC CCGAGAGGGT TGTTTGCGGG CTGGGTGTTA
  CAGCGTGGTG GCATCTCAGG TACAGCTAGA ACCCTGCCGC TGACCGACCT TCTATTTAAA
  TACTCTCTTC CCTATCCAAA CTCGGGCACG AAGGGCCACG CTTGTCCTGT CGCAGCCATG
  GGAGACACCT GCAGAGATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355978231	MGP_WTSI_2_144096729	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254082688					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355978231	MGP_WTSI_2_144096729	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144112913 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12351	CpG island 12351			within coordinates
Mgme1	mitochondrial genome maintenance exonuclease 1			Intron
				mRNA-UTR
Rr397362	regulatory region 397362			within coordinates
Rr397363	regulatory region 397363			423 bp upstream
Rr566424	regulatory region 566424			1481 bp distal
Rr566425	regulatory region 566425			432 bp distal
Rr566426	regulatory region 566426			42 bp distal
Rr566427	regulatory region 566427			within coordinates
Snx5	sorting nexin 5			200 bp upstream
Tssr20524	transcription start site region 20524			402 bp downstream
Tssr20525	transcription start site region 20525			321 bp downstream
Tssr20526	transcription start site region 20526			44 bp downstream
Tssr20527	transcription start site region 20527			18 bp upstream
Tssr20528	transcription start site region 20528			635 bp upstream
Tssr26594	transcription start site region 26594			925 bp upstream
Tssr26595	transcription start site region 26595			507 bp upstream
Tssr26596	transcription start site region 26596			460 bp upstream
Tssr26597	transcription start site region 26597			193 bp upstream
Tssr26598	transcription start site region 26598			146 bp upstream
Tssr26599	transcription start site region 26599			130 bp upstream