rs254076720 SNP Detail

Summary

• ID
  rs254076720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156369411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGAAGTA CACATGACTG
  GCTCCAGCTG CATATGTAGC AGAGGATGAC CTTGTCATGC ATCAGTGGGA GGAGAGGCCC
  TTGGTTCTAT GAAGGTTGGA TAGATGCCCC AGTGTAGGGG AATCGAGGAC AGGGAGGTGG
  GAGTGGGTGG GTGGGTGGGG AGCACCCTCA TAGAAGCAGG GGGAGGGGGA GATGGGATAG
  R
  GGGTTTCCAG GAGGGGGGAG ACTGGGAAAG GGGATAACAT TTGAAATATA AATAAAGAAA
  ATATCCAATA AAAAAAAAGG AAGAGGGGCC GGGTGTGGTG GTACACGCCT TTAATCCCAG
  CACTTAGGAG GCAGAGGCAG GCAGATTTCT GAGTTTGAGG CCAGCCTGGT CTACAAAGTG
  AGTTCCAGGA CAGCCAGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss352040090	MGP_WTSI_1_158471972	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	G	A	A	G	G	A	G	G	G	G	A	G	A	A	A	A	G	A	A	G	G	G	A	G	G	G	A	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs254076720					SNP	G	A	A	G	A	A	G	G	A	G	G	G	G	A	G	A	A	A	A	G	A	A	G	G	G	A	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352040090	MGP_WTSI_1_158471972	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156369411 () rs orientation: forward

Symbol	Name	Function Class
Rr421193	regulatory region 421193	1827 bp distal
Rr421194	regulatory region 421194	1363 bp distal